Stemformatics integrated atlas provides a way to visualise multiple datasets together on a single PCA plot. Read more about it at our about atlas page, which briefly outlines the method we used to construct the atlas and links to our published papers.

You can explore the atlas in several ways: Plot by "sample type" to change the colour of the samples to based on attributes such as cell type or sample source. Plot by "gene expression" to search by gene symbol to overlay a heatmap onto the atlas. Display sample annotations and gene expression data side-by-side. Click on the item in the legend to add or remove that category.

Zoom in or out using your mouse, double-click individual samples to see more information on their origin, cell type, Stemformatics dataset, and sample description. "project other data" function allows you to see where samples from another dataset sit, either from another Stemformatics dataset or your own. You can see exactly which datasets were used to build this atlas by selecting "find dataset" function. All of the data displayed in this atlas are available to download via "download data/plots" function.